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Added flagging option based on setting pre/post scales to 1.

Christina Agapopoulou requested to merge hlt1_flagging_on_master into 2024-patches

Port flagging (implemented for 2023 realistic simulation 41de38e1 ) to master.

Reminder: flagging is currently implemented based on removing all pre/post scales and therefore relies on the Passthrough line to be present in the sequence. A more robust solution should be put in place in the future.

TODO: add a test

@rjhunter

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