Synchronize master branch with 2025-patches

Includes:

• Update References for: !468 (merged) based on lhcb-2025-patches-mr/345 (!469 (merged))
• Add run duration to PDFs (!468 (merged))
• Fixes from the pit (!467 (merged))
• Update References for: Rec!4333 (merged), Moore!4781 (merged) based on lhcb-2025-patches-mr/103 (!462 (merged))