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Add new QEE HLT2 and Sprucing Lines to master

Ross John Hunter requested to merge qee_upgrade into master

FYI @wbarter @lcalefic @ncooke @jideng @tmombach @fredi @lsestini @ausachov @cvazquez @hyin @dzuliani (tagging conveners, liaisons and those who contributed MRs to this effort, apologies if I missed anyone!)

This MR adds the following QEE-specific developments to master:

It also adds QEE-specific example options files, which can be removed and kept on a QEE-specific branch to avoid cluttering master if desired.

Most of the lines are not migrated to ThOr due to missing functors, which are all known and documented in various issues. All lines here that can be migrated at this time have been migrated.

Rates and efficiency information will be collated and posted in the description.

Edited by Ross John Hunter

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