Synchronize master branch with 2024-patches

Includes:

• Ref updates
• Update References for: LHCb!4565 (merged), Moore!3448 (merged), Moore!3506 (merged), !1099 (merged) based... (!1106 (merged))
• Change in exclusion list following LHCb!4565 (merged) (!1099 (merged))
• Remove unneccesary ProbNN options (!1105 (merged))
• New functors for estimation of helicity angle (!1040 (merged))
• Prepare v64r6 (!1102 (merged))
• Update References for: LHCb!4533 (merged), Rec!3799 (merged), Moore!3343 (merged), !1048 (merged), LHCbIntegrationTests!69 (merged) based on lhcb-2024-patches-mr/556 (!1101 (merged))
• Add an options file that configures the Flavour Tagging (!1048 (merged))
• Add test for track refitting (!1047 (merged))
• Fix matrix support to FunTuple (!1094 (merged))

Goes with: Detector!565 (merged) LHCb!4575 (merged) Lbcom!735 (merged) Rec!3943 (merged) Allen!1648 (merged) Moore!3504 (merged) !1098 (merged) Alignment!510 (merged) Panoptes!351 (merged) MooreOnline!444 (merged) LHCbIntegrationTests!71 (merged)